WormBase Tree Display for CDS: PPA25307
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PPA25307 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 189 | |||
311 | 379 | |||||
482 | 559 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S387-5.76 | ||
TREEFAM | TREEFAM_ID | TF300251 | ||||
DB_remark | contains similarity to Pfam domain PF05347 (Complex 1 protein (LYR family)); contains similarity to Interpro domain IPR008011 (Complex 1 LYR protein domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00114861 | ||||
Corresponding_transcript | PPA25307.1 | |||||
Corresponding_protein | PP67441 | |||||
Matching_cDNA | FG097884 | Inferred_automatically | transcript_builder.pl | |||
FG099087 | Inferred_automatically | transcript_builder.pl | ||||
BM812586 | Inferred_automatically | transcript_builder.pl | ||||
BM565784 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000032 | 96.7568 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 152.449 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S387-5.76 | Curator_confirmed | WBPerson4055 | |||
Method | curated |