WormBase Tree Display for CDS: PPA25308
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| PPA25308 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (29) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S387-5.64 | ||
| DB_remark | contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF05328 (CybS, succinate dehydrogenase cytochrome B small subunit), PF10237 (Probable N6-adenine methyltransferase); contains similarity to Interpro domains IPR039846 (Zinc finger CCHC domain-containing protein 4), IPR002486 (Nematode cuticle collagen, N-terminal), IPR034804 (Fumarate reductase/succinate dehydrogenase, transmembrane subunit), IPR041370 (Methyltransferase EEF1AKMT1/ZCCHC4) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00114862 | ||||
| Corresponding_transcript | PPA25308.1 | |||||
| Corresponding_protein | PP68775 | |||||
| Corresponding_oligo_set | GPL14372_Probes_28485 | |||||
| GPL14372_Probes_28486 | ||||||
| GPL14372_Probes_28487 | ||||||
| GPL14372_Probes_83839 | ||||||
| Matching_cDNA | FG104279 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_28485 | |||||
| GPL14372_Probes_28486 | ||||||
| GPL14372_Probes_28487 | ||||||
| GPL14372_Probes_83839 | ||||||
| RNASeq_FPKM | WBls:0000032 | 54.9665 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 13.7314 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S387-5.64 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
