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WormBase Tree Display for CDS: PPA25325

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Name Class

PPA25325SMapS_parentSequencePPA_ChrII
StructureSource_exons180
210294
3631148
DB_infoDatabasepristionchus.orgcdsgene-UMM-S387-6.71
DB_remarkPPA-COL-77 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00114879
Corresponding_transcriptPPA25325.1
Corresponding_proteinPP20073
Matching_cDNAAW114206Inferred_automaticallytranscript_builder.pl
BQ088056Inferred_automaticallytranscript_builder.pl
EB182641Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:00000328.41711From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001017.45663From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S387-6.71Curator_confirmedWBPerson4055
Methodcurated