WormBase Tree Display for CDS: PPA25343
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| PPA25343 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (14) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S387-6.76 | ||
| DB_remark | contains similarity to Pfam domains PF00929 (Exonuclease), PF13639 (Ring finger domain); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR013520 (Exonuclease, RNase T/DNA polymerase III), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR034920 () | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00114897 | ||||
| Corresponding_transcript | PPA25343.1 | |||||
| Corresponding_protein | PP65751 | |||||
| Corresponding_oligo_set | GPL14372_Probes_53262 | |||||
| GPL14372_Probes_53263 | ||||||
| GPL14372_Probes_53264 | ||||||
| GPL14372_Probes_53266 | ||||||
| GPL14372_Probes_53270 | ||||||
| Matching_cDNA | FG099430 | Inferred_automatically | transcript_builder.pl | |||
| FG095497 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_53262 | |||||
| GPL14372_Probes_53263 | ||||||
| GPL14372_Probes_53264 | ||||||
| GPL14372_Probes_53266 | ||||||
| GPL14372_Probes_53270 | ||||||
| RNASeq_FPKM | WBls:0000032 | 65.6309 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 33.2215 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S387-6.76 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
