WormBase Tree Display for CDS: PPA25345
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PPA25345 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (24) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S387-6.56 | ||
TREEFAM | TREEFAM_ID | TF329550 | ||||
DB_remark | contains similarity to Pfam domains PF12999 (Glucosidase II beta subunit-like), PF13015 (Glucosidase II beta subunit-like protein); contains similarity to Interpro domains IPR036055 (LDL receptor-like superfamily), IPR036607 (Glucosidase 2 subunit beta-like), IPR028146 (Glucosidase II beta subunit, N-terminal), IPR009011 (Mannose-6-phosphate receptor binding domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00114899 | ||||
Corresponding_transcript | PPA25345.1 | |||||
Corresponding_protein | PP69501 | |||||
Corresponding_oligo_set | GPL14372_Probes_53286 | |||||
GPL14372_Probes_53287 | ||||||
GPL14372_Probes_53289 | ||||||
GPL14372_Probes_53290 | ||||||
GPL14372_Probes_53294 | ||||||
GPL14372_Probes_53295 | ||||||
GPL14372_Probes_53296 | ||||||
Matching_cDNA | EB182572 | Inferred_automatically | transcript_builder.pl | |||
FG097317 | Inferred_automatically | transcript_builder.pl | ||||
FE939701 | Inferred_automatically | transcript_builder.pl | ||||
FE934921 | Inferred_automatically | transcript_builder.pl | ||||
FE939053 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_53286 | |||||
GPL14372_Probes_53287 | ||||||
GPL14372_Probes_53289 | ||||||
GPL14372_Probes_53290 | ||||||
GPL14372_Probes_53294 | ||||||
GPL14372_Probes_53295 | ||||||
GPL14372_Probes_53296 | ||||||
RNASeq_FPKM | WBls:0000032 | 71.9072 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 33.0244 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S387-6.56 | Curator_confirmed | WBPerson4055 | |||
Method | curated |