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WormBase Tree Display for CDS: PPA25345

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Name Class

PPA25345SMapS_parentSequencePPA_ChrII
StructureSource_exons (24)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S387-6.56
TREEFAMTREEFAM_IDTF329550
DB_remarkcontains similarity to Pfam domains PF12999 (Glucosidase II beta subunit-like), PF13015 (Glucosidase II beta subunit-like protein); contains similarity to Interpro domains IPR036055 (LDL receptor-like superfamily), IPR036607 (Glucosidase 2 subunit beta-like), IPR028146 (Glucosidase II beta subunit, N-terminal), IPR009011 (Mannose-6-phosphate receptor binding domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00114899
Corresponding_transcriptPPA25345.1
Corresponding_proteinPP69501
Corresponding_oligo_setGPL14372_Probes_53286
GPL14372_Probes_53287
GPL14372_Probes_53289
GPL14372_Probes_53290
GPL14372_Probes_53294
GPL14372_Probes_53295
GPL14372_Probes_53296
Matching_cDNAEB182572Inferred_automaticallytranscript_builder.pl
FG097317Inferred_automaticallytranscript_builder.pl
FE939701Inferred_automaticallytranscript_builder.pl
FE934921Inferred_automaticallytranscript_builder.pl
FE939053Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_53286
GPL14372_Probes_53287
GPL14372_Probes_53289
GPL14372_Probes_53290
GPL14372_Probes_53294
GPL14372_Probes_53295
GPL14372_Probes_53296
RNASeq_FPKMWBls:000003271.9072From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010133.0244From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S387-6.56Curator_confirmedWBPerson4055
Methodcurated