WormBase Tree Display for CDS: PPA25660
expand all nodes | collapse all nodes | view schema
PPA25660 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 51 | |||
215 | 265 | |||||
398 | 466 | |||||
1184 | 1272 | |||||
1550 | 1598 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-22.26 | ||
DB_remark | contains similarity to Pfam domain PF00619 (Caspase recruitment domain); contains similarity to Interpro domains IPR011029 (Death-like domain superfamily), IPR001315 (CARD domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00115214 | ||||
Corresponding_transcript | PPA25660.1 | |||||
Corresponding_protein | PP59928 | |||||
Corresponding_oligo_set | GPL14372_Probes_69472 | |||||
GPL14372_Probes_69473 | ||||||
Microarray_results | GPL14372_Probes_69472 | |||||
GPL14372_Probes_69473 | ||||||
RNASeq_FPKM | WBls:0000032 | 88.5849 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-22.26 | Curator_confirmed | WBPerson4055 | |||
Method | curated |