WormBase Tree Display for CDS: PPA25686
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PPA25686 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (122) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-16.83 | ||
DB_remark | contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)), PF01826 (Trypsin Inhibitor like cysteine rich domain), PF02045 (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B); contains similarity to Interpro domains IPR001289 (Nuclear transcription factor Y subunit A), IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR043519 (Nucleotidyltransferase superfamily), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR002919 (Trypsin Inhibitor-like, cysteine rich domain), IPR036084 (Serine protease inhibitor-like superfamily), IPR035500 (Nuclear hormone receptor-like domain superfamily), IPR015915 (Kelch-type beta propeller) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00115240 | ||||
Corresponding_transcript | PPA25686.1 | |||||
Corresponding_protein | PP64496 | |||||
Corresponding_oligo_set (24) | ||||||
Matching_cDNA | AW115309 | Inferred_automatically | transcript_builder.pl | |||
FG106462 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (24) | ||||||
RNASeq_FPKM | WBls:0000032 | 5.1765 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 12.2256 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-16.83 | Curator_confirmed | WBPerson4055 | |||
Method | curated |