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WormBase Tree Display for CDS: PPA25686

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Name Class

PPA25686SMapS_parentSequencePPA_ChrI
StructureSource_exons (122)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S259-16.83
DB_remarkcontains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)), PF01826 (Trypsin Inhibitor like cysteine rich domain), PF02045 (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B); contains similarity to Interpro domains IPR001289 (Nuclear transcription factor Y subunit A), IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR043519 (Nucleotidyltransferase superfamily), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR002919 (Trypsin Inhibitor-like, cysteine rich domain), IPR036084 (Serine protease inhibitor-like superfamily), IPR035500 (Nuclear hormone receptor-like domain superfamily), IPR015915 (Kelch-type beta propeller)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00115240
Corresponding_transcriptPPA25686.1
Corresponding_proteinPP64496
Corresponding_oligo_set (24)
Matching_cDNAAW115309Inferred_automaticallytranscript_builder.pl
FG106462Inferred_automaticallytranscript_builder.pl
Microarray_results (24)
RNASeq_FPKMWBls:00000325.1765From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010112.2256From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S259-16.83Curator_confirmedWBPerson4055
Methodcurated