WormBase Tree Display for CDS: PPA25932
expand all nodes | collapse all nodes | view schema
| PPA25932 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (24) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2854-5.41 | ||
| DB_remark | contains similarity to Pfam domains PF01043 (SecA preprotein cross-linking domain), PF07517 (SecA DEAD-like domain); contains similarity to Interpro domains IPR011130 (SecA, preprotein cross-linking domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000185 (Protein translocase subunit SecA), IPR036670 (SecA, preprotein cross-linking domain superfamily), IPR011115 (SecA DEAD-like, N-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00115486 | ||||
| Corresponding_transcript | PPA25932.1 | |||||
| Corresponding_protein | PP69753 | |||||
| Corresponding_oligo_set | GPL14372_Probes_34154 | |||||
| GPL14372_Probes_34155 | ||||||
| GPL14372_Probes_34156 | ||||||
| GPL14372_Probes_8287 | ||||||
| GPL14372_Probes_8289 | ||||||
| GPL14372_Probes_8290 | ||||||
| GPL14372_Probes_8291 | ||||||
| GPL14372_Probes_8292 | ||||||
| Microarray_results | GPL14372_Probes_8287 | |||||
| GPL14372_Probes_8289 | ||||||
| GPL14372_Probes_8290 | ||||||
| GPL14372_Probes_8291 | ||||||
| GPL14372_Probes_8292 | ||||||
| GPL14372_Probes_34154 | ||||||
| GPL14372_Probes_34155 | ||||||
| GPL14372_Probes_34156 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2854-5.41 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
