WormBase Tree Display for CDS: PPA25973
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PPA25973 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 87 | |||
214 | 323 | |||||
398 | 479 | |||||
580 | 699 | |||||
870 | 1118 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2854-7.61 | ||
DB_remark | contains similarity to Pfam domain PF00337 (Galactoside-binding lectin); contains similarity to Interpro domains IPR001079 (Galectin, carbohydrate recognition domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00115527 | ||||
Corresponding_transcript | PPA25973.1 | |||||
Corresponding_protein | PP58377 | |||||
Corresponding_oligo_set | GPL14372_Probes_52844 | |||||
GPL14372_Probes_52845 | ||||||
GPL14372_Probes_52846 | ||||||
GPL14372_Probes_52847 | ||||||
Microarray_results | GPL14372_Probes_52844 | |||||
GPL14372_Probes_52845 | ||||||
GPL14372_Probes_52846 | ||||||
GPL14372_Probes_52847 | ||||||
RNASeq_FPKM | WBls:0000032 | 14.502 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.56647 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2854-7.61 | Curator_confirmed | WBPerson4055 | |||
Method | curated |