WormBase Tree Display for CDS: PPA26292
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PPA26292 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (12) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-12.70 | ||
TREEFAM | TREEFAM_ID | TF315373 | ||||
DB_remark | PPA-NHR-39 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00115846 | ||||
Corresponding_transcript | PPA26292.1 | |||||
Corresponding_protein | PP59089 | |||||
Corresponding_oligo_set | GPL14372_Probes_68539 | |||||
GPL14372_Probes_68540 | ||||||
GPL14372_Probes_68541 | ||||||
GPL14372_Probes_68542 | ||||||
GPL14372_Probes_68543 | ||||||
GPL14372_Probes_68544 | ||||||
Microarray_results | GPL14372_Probes_68539 | |||||
GPL14372_Probes_68540 | ||||||
GPL14372_Probes_68541 | ||||||
GPL14372_Probes_68542 | ||||||
GPL14372_Probes_68543 | ||||||
GPL14372_Probes_68544 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.82453 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-12.70 | Curator_confirmed | WBPerson4055 | |||
Method | curated |