WormBase Tree Display for CDS: PPA26303
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| PPA26303 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (22) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-13.61 | ||
| TREEFAM | TREEFAM_ID | TF300858 | ||||
| DB_remark | contains similarity to Pfam domains PF00587 (tRNA synthetase class II core domain (G, H, P, S and T)), PF02824 (TGS domain), PF03129 (Anticodon binding domain), PF07973 (Threonyl and Alanyl tRNA synthetase second additional domain); contains similarity to Interpro domains IPR002320 (Threonine-tRNA ligase, class IIa), IPR036621 (Anticodon-binding domain superfamily), IPR002314 (Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)), IPR012675 (Beta-grasp domain superfamily), IPR012947 (Threonyl/alanyl tRNA synthetase, SAD), IPR004154 (Anticodon-binding), IPR018163 (Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily), IPR012676 (TGS-like), IPR004095 (TGS) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00115857 | ||||
| Corresponding_transcript | PPA26303.1 | |||||
| Corresponding_protein | PP74435 | |||||
| Corresponding_oligo_set | GPL14372_Probes_68504 | |||||
| GPL14372_Probes_68505 | ||||||
| GPL14372_Probes_68506 | ||||||
| GPL14372_Probes_68507 | ||||||
| GPL14372_Probes_68508 | ||||||
| Matching_cDNA | AW115108 | Inferred_automatically | transcript_builder.pl | |||
| AW052687 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_68504 | |||||
| GPL14372_Probes_68505 | ||||||
| GPL14372_Probes_68506 | ||||||
| GPL14372_Probes_68507 | ||||||
| GPL14372_Probes_68508 | ||||||
| RNASeq_FPKM | WBls:0000032 | 34.2916 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 11.8117 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 21 Feb 2019 09:54:44 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S57-13.61 | Curator_confirmed | WBPerson4055 | |||
| [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | ||||
| Method | curated |
