WormBase Tree Display for CDS: PPA26334
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PPA26334 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (48) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S57-15.30 | ||
DB_remark | PPA-ADT-2 protein; contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain), PF00135 (Carboxylesterase family), PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF01562 (Reprolysin family propeptide), PF17771 (ADAMTS cysteine-rich domain 2); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR029058 (Alpha/Beta hydrolase fold), IPR002018 (Carboxylesterase, type B), IPR002870 (Peptidase M12B, propeptide), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR041645 (ADAMTS, cysteine-rich domain 2), IPR001590 (Peptidase M12B, ADAM/reprolysin) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00115888 | ||||
Corresponding_transcript | PPA26334.1 | |||||
Corresponding_protein | PP73559 | |||||
Corresponding_oligo_set | GPL14372_Probes_17728 | |||||
GPL14372_Probes_17729 | ||||||
GPL14372_Probes_17731 | ||||||
GPL14372_Probes_17732 | ||||||
GPL14372_Probes_17734 | ||||||
GPL14372_Probes_17736 | ||||||
GPL14372_Probes_17737 | ||||||
GPL14372_Probes_17738 | ||||||
Microarray_results | GPL14372_Probes_17728 | |||||
GPL14372_Probes_17729 | ||||||
GPL14372_Probes_17731 | ||||||
GPL14372_Probes_17732 | ||||||
GPL14372_Probes_17734 | ||||||
GPL14372_Probes_17736 | ||||||
GPL14372_Probes_17737 | ||||||
GPL14372_Probes_17738 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S57-15.30 | Curator_confirmed | WBPerson4055 | |||
Method | curated |