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WormBase Tree Display for CDS: PPA26334

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Name Class

PPA26334SMapS_parentSequencePPA_ChrI
StructureSource_exons (48)
DB_infoDatabasepristionchus.orgcdsgene-UMA-S57-15.30
DB_remarkPPA-ADT-2 protein; contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain), PF00135 (Carboxylesterase family), PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF01562 (Reprolysin family propeptide), PF17771 (ADAMTS cysteine-rich domain 2); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR029058 (Alpha/Beta hydrolase fold), IPR002018 (Carboxylesterase, type B), IPR002870 (Peptidase M12B, propeptide), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR041645 (ADAMTS, cysteine-rich domain 2), IPR001590 (Peptidase M12B, ADAM/reprolysin)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00115888
Corresponding_transcriptPPA26334.1
Corresponding_proteinPP73559
Corresponding_oligo_setGPL14372_Probes_17728
GPL14372_Probes_17729
GPL14372_Probes_17731
GPL14372_Probes_17732
GPL14372_Probes_17734
GPL14372_Probes_17736
GPL14372_Probes_17737
GPL14372_Probes_17738
Microarray_resultsGPL14372_Probes_17728
GPL14372_Probes_17729
GPL14372_Probes_17731
GPL14372_Probes_17732
GPL14372_Probes_17734
GPL14372_Probes_17736
GPL14372_Probes_17737
GPL14372_Probes_17738
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMA-S57-15.30Curator_confirmedWBPerson4055
Methodcurated