WormBase Tree Display for CDS: PPA26345
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PPA26345 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 77 | |||
257 | 347 | |||||
394 | 476 | |||||
754 | 871 | |||||
974 | 1081 | |||||
1124 | 1204 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-15.14 | ||
TREEFAM | TREEFAM_ID | TF315123 | ||||
DB_remark | contains similarity to Pfam domains PF01472 (PUA domain), PF17832 (Pre-PUA-like domain); contains similarity to Interpro domains IPR036974 (PUA domain superfamily), IPR004521 (Uncharacterised domain CHP00451), IPR015947 (PUA-like superfamily), IPR002478 (PUA domain), IPR016437 (MCT-1/Tma20), IPR041366 (Pre-PUA domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00115899 | ||||
Corresponding_transcript | PPA26345.1 | |||||
Corresponding_protein | PP73833 | |||||
Corresponding_oligo_set | GPL14372_Probes_68430 | |||||
GPL14372_Probes_68431 | ||||||
GPL14372_Probes_68432 | ||||||
GPL14372_Probes_68433 | ||||||
GPL14372_Probes_68434 | ||||||
Matching_cDNA | FG098691 | Inferred_automatically | transcript_builder.pl | |||
FG099233 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_68430 | |||||
GPL14372_Probes_68431 | ||||||
GPL14372_Probes_68432 | ||||||
GPL14372_Probes_68433 | ||||||
GPL14372_Probes_68434 | ||||||
RNASeq_FPKM | WBls:0000032 | 74.7278 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 88.2823 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-15.14 | Curator_confirmed | WBPerson4055 | |||
Method | curated |