WormBase Tree Display for CDS: PPA26346

PPA26346 Evidence: Curator_confirmed: WBPerson4055
  SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons (41)
  DB_info: Database: pristionchus.org cds gene-UMM-S57-15.20
    DB_remark: PPA-MRP-5 protein; contains similarity to Pfam domains PF00005 (ABC transporter), PF00664 (ABC transporter transmembrane region); contains similarity to Interpro domains IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003439 (ABC transporter-like, ATP-binding domain), IPR036640 (ABC transporter type 1, transmembrane domain superfamily), IPR003593 (AAA+ ATPase domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00115900
    Corresponding_transcript: PPA26346.1
    Corresponding_protein: PP75528
    Corresponding_oligo_set: GPL14372_Probes_17715
      GPL14372_Probes_17716
      GPL14372_Probes_17718
      GPL14372_Probes_17719
      GPL14372_Probes_68427
      GPL14372_Probes_68428
    Matching_cDNA: AW052380 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_17715
      GPL14372_Probes_17716
      GPL14372_Probes_17718
      GPL14372_Probes_17719
      GPL14372_Probes_68427
      GPL14372_Probes_68428
    RNASeq_FPKM: WBls:0000032 0.796594 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.940715 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Last_reviewed: 08 Nov 2019 14:44:57 WBPerson4055
    Remark: [171116 mh6] renamed from gene-UMM-S57-15.20 Curator_confirmed: WBPerson4055
      [191108 mh6] This CDS has been updated based on the RNAseq data. Curator_confirmed: WBPerson4055
        From_analysis: RNASeq
  Method: curated