WormBase Tree Display for CDS: PPA26403
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| PPA26403 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (33) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-49.9 | ||
| DB_remark | contains similarity to Pfam domains PF00013 (KH domain), PF00076 (RNA recognition motif), PF00567 (Tudor domain), PF16544 (Homodimerisation region of STAR domain protein); contains similarity to Interpro domains IPR031119 (), IPR004087 (K Homology domain), IPR036612 (K Homology domain, type 1 superfamily), IPR035979 (RNA-binding domain superfamily), IPR004088 (K Homology domain, type 1), IPR002999 (Tudor domain), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR032377 (STAR protein, homodimerisation region), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00115957 | ||||
| Corresponding_transcript | PPA26403.1 | |||||
| Corresponding_protein | PP51900 | |||||
| Corresponding_oligo_set | GPL14372_Probes_36390 | |||||
| GPL14372_Probes_36391 | ||||||
| GPL14372_Probes_36392 | ||||||
| GPL14372_Probes_36393 | ||||||
| GPL14372_Probes_36394 | ||||||
| Microarray_results | GPL14372_Probes_36390 | |||||
| GPL14372_Probes_36391 | ||||||
| GPL14372_Probes_36392 | ||||||
| GPL14372_Probes_36393 | ||||||
| GPL14372_Probes_36394 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.28929 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S7-49.9 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
