WormBase Tree Display for CDS: PPA26450
expand all nodes | collapse all nodes | view schema
| PPA26450 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (19) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-46.15 | ||
| TREEFAM | TREEFAM_ID | TF314123 | ||||
| DB_remark | contains similarity to Pfam domains PF00535 (Glycosyl transferase family 2), PF00652 (Ricin-type beta-trefoil lectin domain); contains similarity to Interpro domains IPR035992 (Ricin B-like lectins), IPR000772 (Ricin B, lectin domain), IPR001173 (Glycosyltransferase 2-like), IPR029044 (Nucleotide-diphospho-sugar transferases) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00116004 | ||||
| Corresponding_transcript | PPA26450.1 | |||||
| Corresponding_protein | PP75685 | |||||
| Corresponding_oligo_set | GPL14372_Probes_1030 | |||||
| GPL14372_Probes_1033 | ||||||
| GPL14372_Probes_1034 | ||||||
| Microarray_results | GPL14372_Probes_1030 | |||||
| GPL14372_Probes_1033 | ||||||
| GPL14372_Probes_1034 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 08 Nov 2019 10:30:13 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S7-46.15 | Curator_confirmed | WBPerson4055 | |||
| [191108 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
