WormBase Tree Display for CDS: PPA26510
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PPA26510 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrI | |||
Structure | Source_exons | 1 | 57 | |||
127 | 209 | |||||
333 | 396 | |||||
589 | 645 | |||||
774 | 881 | |||||
1551 | 1637 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S7-44.12 | ||
DB_remark | PPA-PQN-68 protein; contains similarity to Pfam domain PF02580 (D-Tyr-tRNA(Tyr) deacylase); contains similarity to Interpro domains IPR023509 (D-aminoacyl-tRNA deacylase-like superfamily), IPR003732 (D-aminoacyl-tRNA deacylase DTD) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00116064 | ||||
Corresponding_transcript | PPA26510.1 | |||||
Corresponding_protein | PP14771 | |||||
Corresponding_oligo_set | GPL14372_Probes_35422 | |||||
GPL14372_Probes_35424 | ||||||
Matching_cDNA | BQ087803 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_35422 | |||||
GPL14372_Probes_35424 | ||||||
RNASeq_FPKM | WBls:0000032 | 14.1525 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 16.7198 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 21 Aug 2019 11:52:04 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMS-S7-44.12 | Curator_confirmed | WBPerson4055 | |||
[190821 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |