WormBase Tree Display for CDS: PPA26551
expand all nodes | collapse all nodes | view schema
PPA26551 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 43 | |||
189 | 313 | |||||
520 | 615 | |||||
869 | 997 | |||||
2023 | 2082 | |||||
2342 | 2416 | |||||
2902 | 3021 | |||||
3191 | 3314 | |||||
3443 | 3543 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-42.58 | ||
DB_remark | PPA-PHO-7 protein; contains similarity to Pfam domain PF00328 (Histidine phosphatase superfamily (branch 2)); contains similarity to Interpro domains IPR000560 (Histidine phosphatase superfamily, clade-2), IPR029033 (Histidine phosphatase superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00116105 | ||||
Corresponding_transcript | PPA26551.1 | |||||
Corresponding_protein | PP72153 | |||||
Corresponding_oligo_set | GPL14372_Probes_36186 | |||||
GPL14372_Probes_36187 | ||||||
Microarray_results | GPL14372_Probes_36186 | |||||
GPL14372_Probes_36187 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.3811 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-42.58 | Curator_confirmed | WBPerson4055 | |||
Method | curated |