WormBase Tree Display for CDS: PPA26846
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| PPA26846 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (25) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-8.47 | ||
| DB_remark | contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00651 (BTB/POZ domain), PF01344 (Kelch motif), PF07707 (BTB And C-terminal Kelch); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR000210 (BTB/POZ domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR006652 (Kelch repeat type 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR011705 (BTB/Kelch-associated), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR015915 (Kelch-type beta propeller) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00116400 | ||||
| Corresponding_transcript | PPA26846.1 | |||||
| Corresponding_protein | PP71057 | |||||
| Corresponding_oligo_set | GPL14372_Probes_17877 | |||||
| GPL14372_Probes_17890 | ||||||
| GPL14372_Probes_17891 | ||||||
| GPL14372_Probes_17893 | ||||||
| Microarray_results | GPL14372_Probes_17877 | |||||
| GPL14372_Probes_17890 | ||||||
| GPL14372_Probes_17891 | ||||||
| GPL14372_Probes_17893 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-8.47 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
