WormBase Tree Display for CDS: PPA27014
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PPA27014 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 96 | |||
500 | 547 | |||||
644 | 811 | |||||
889 | 1013 | |||||
1091 | 1203 | |||||
1305 | 1411 | |||||
1467 | 1535 | |||||
1663 | 1764 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-8.40 | ||
DB_remark | contains similarity to Pfam domain PF00104 (Ligand-binding domain of nuclear hormone receptor); contains similarity to Interpro domains IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00116568 | ||||
Corresponding_transcript | PPA27014.1 | |||||
Corresponding_protein | PP52109 | |||||
Corresponding_oligo_set | GPL14372_Probes_26733 | |||||
GPL14372_Probes_26734 | ||||||
GPL14372_Probes_26735 | ||||||
GPL14372_Probes_26736 | ||||||
GPL14372_Probes_26737 | ||||||
Microarray_results | GPL14372_Probes_26733 | |||||
GPL14372_Probes_26734 | ||||||
GPL14372_Probes_26735 | ||||||
GPL14372_Probes_26736 | ||||||
GPL14372_Probes_26737 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2840-8.40 | Curator_confirmed | WBPerson4055 | |||
Method | curated |