WormBase Tree Display for CDS: PPA27141
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| PPA27141 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (39) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2854-13.51 | ||
| DB_remark | PPA-RIG-6 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR016187 (C-type lectin fold), IPR036116 (Fibronectin type III superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00116695 | ||||
| Corresponding_transcript | PPA27141.1 | |||||
| Corresponding_protein | PP66488 | |||||
| Corresponding_oligo_set | GPL14372_Probes_52678 | |||||
| GPL14372_Probes_52679 | ||||||
| GPL14372_Probes_52680 | ||||||
| GPL14372_Probes_52681 | ||||||
| GPL14372_Probes_8064 | ||||||
| GPL14372_Probes_8066 | ||||||
| GPL14372_Probes_8067 | ||||||
| GPL14372_Probes_8068 | ||||||
| GPL14372_Probes_8070 | ||||||
| Microarray_results | GPL14372_Probes_8064 | |||||
| GPL14372_Probes_8066 | ||||||
| GPL14372_Probes_8067 | ||||||
| GPL14372_Probes_8068 | ||||||
| GPL14372_Probes_8070 | ||||||
| GPL14372_Probes_52678 | ||||||
| GPL14372_Probes_52679 | ||||||
| GPL14372_Probes_52680 | ||||||
| GPL14372_Probes_52681 | ||||||
| RNASeq_FPKM | WBls:0000032 | 7.59842 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2854-13.51 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
