WormBase Tree Display for CDS: PPA27257
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| PPA27257 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (13) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-18.19 | ||
| TREEFAM | TREEFAM_ID | TF313626 | ||||
| DB_remark | contains similarity to Pfam domain PF03371 (PRP38 family); contains similarity to Interpro domain IPR005037 (Pre-mRNA-splicing factor 38) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00116811 | ||||
| Corresponding_transcript | PPA27257.1 | |||||
| Corresponding_protein | PP75612 | |||||
| Corresponding_oligo_set | GPL14372_Probes_72617 | |||||
| GPL14372_Probes_72618 | ||||||
| GPL14372_Probes_72620 | ||||||
| GPL14372_Probes_72621 | ||||||
| Matching_cDNA | DV018728 | Inferred_automatically | transcript_builder.pl | |||
| FG098983 | Inferred_automatically | transcript_builder.pl | ||||
| FE937415 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_72617 | |||||
| GPL14372_Probes_72618 | ||||||
| GPL14372_Probes_72620 | ||||||
| GPL14372_Probes_72621 | ||||||
| RNASeq_FPKM | WBls:0000032 | 109.491 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 188.105 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 08 Nov 2019 11:37:27 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S207-18.19 | Curator_confirmed | WBPerson4055 | |||
| [191108 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
