WormBase Tree Display for CDS: PPA27261
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| PPA27261 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (14) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-18.30 | ||
| DB_remark | contains similarity to Pfam domain PF00876 (Innexin); contains similarity to Interpro domain IPR000990 (Innexin) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00116815 | ||||
| Corresponding_transcript | PPA27261.1 | |||||
| Corresponding_protein | PP56579 | |||||
| Corresponding_oligo_set | GPL14372_Probes_72596 | |||||
| GPL14372_Probes_72597 | ||||||
| GPL14372_Probes_72599 | ||||||
| GPL14372_Probes_72600 | ||||||
| GPL14372_Probes_72602 | ||||||
| GPL14372_Probes_72603 | ||||||
| Matching_cDNA | FG102801 | Inferred_automatically | transcript_builder.pl | |||
| AW097277 | Inferred_automatically | transcript_builder.pl | ||||
| FG100327 | Inferred_automatically | transcript_builder.pl | ||||
| AW114398 | Inferred_automatically | transcript_builder.pl | ||||
| AW097579 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_72596 | |||||
| GPL14372_Probes_72597 | ||||||
| GPL14372_Probes_72599 | ||||||
| GPL14372_Probes_72600 | ||||||
| GPL14372_Probes_72602 | ||||||
| GPL14372_Probes_72603 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 43.4311 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-18.30 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
