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WormBase Tree Display for CDS: PPA27271

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Name Class

PPA27271SMapS_parentSequencePPA_ChrI
StructureSource_exons (29)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S207-19.42
TREEFAMTREEFAM_IDTF105743
DB_remarkPPA-PRP-6 protein; contains similarity to Pfam domains PF06424 (PRP1 splicing factor, N-terminal), PF14559 (Tetratricopeptide repeat); contains similarity to Interpro domains IPR003107 (HAT (Half-A-TPR) repeat), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR027108 (), IPR010491 (PRP1 splicing factor, N-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00116825
Corresponding_transcriptPPA27271.1
Corresponding_proteinPP25571
Corresponding_oligo_setGPL14372_Probes_72572
GPL14372_Probes_72573
GPL14372_Probes_72575
Microarray_resultsGPL14372_Probes_72572
GPL14372_Probes_72573
GPL14372_Probes_72575
RNASeq_FPKMWBls:000003210.9796From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010118.7292From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S207-19.42Curator_confirmedWBPerson4055
Methodcurated