WormBase Tree Display for CDS: PPA27289
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| PPA27289 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (22) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-20.50 | ||
| DB_remark | contains similarity to Pfam domains PF00155 (Aminotransferase class I and II), PF02953 (Tim10/DDP family zinc finger); contains similarity to Interpro domains IPR004217 (Tim10-like), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR004839 (Aminotransferase, class I/classII), IPR035427 (Tim10-like domain superfamily), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00116843 | ||||
| Corresponding_transcript | PPA27289.1 | |||||
| Corresponding_protein | PP71194 | |||||
| Corresponding_oligo_set | GPL14372_Probes_56080 | |||||
| GPL14372_Probes_56081 | ||||||
| GPL14372_Probes_72502 | ||||||
| GPL14372_Probes_72503 | ||||||
| GPL14372_Probes_90202 | ||||||
| GPL14372_Probes_90203 | ||||||
| GPL14372_Probes_90204 | ||||||
| Matching_cDNA | BI500533 | Inferred_automatically | transcript_builder.pl | |||
| CN657666 | Inferred_automatically | transcript_builder.pl | ||||
| CN657985 | Inferred_automatically | transcript_builder.pl | ||||
| CO870523 | Inferred_automatically | transcript_builder.pl | ||||
| CO871050 | Inferred_automatically | transcript_builder.pl | ||||
| FG104568 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_56080 | |||||
| GPL14372_Probes_56081 | ||||||
| GPL14372_Probes_72502 | ||||||
| GPL14372_Probes_72503 | ||||||
| GPL14372_Probes_90202 | ||||||
| GPL14372_Probes_90203 | ||||||
| GPL14372_Probes_90204 | ||||||
| RNASeq_FPKM | WBls:0000032 | 63.459 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 22.0428 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-20.50 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
