WormBase Tree Display for CDS: PPA27326
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| PPA27326 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 21 | |||
| 189 | 334 | |||||
| 706 | 850 | |||||
| 1201 | 1420 | |||||
| 1467 | 1563 | |||||
| 1610 | 1749 | |||||
| 1790 | 1854 | |||||
| 1977 | 2090 | |||||
| 2342 | 2428 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-21.58 | ||
| TREEFAM | TREEFAM_ID | TF300252 | ||||
| DB_remark | PPA-RPL-30 protein; contains similarity to Pfam domains PF00485 (Phosphoribulokinase / Uridine kinase family), PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029925 (), IPR029064 (Ribosomal protein eL30-like superfamily), IPR004038 (Ribosomal protein eL8/eL30/eS12/Gadd45), IPR006083 (Phosphoribulokinase/uridine kinase) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00116880 | ||||
| Corresponding_transcript | PPA27326.1 | |||||
| Corresponding_protein | PP65754 | |||||
| Corresponding_oligo_set | GPL14372_Probes_72396 | |||||
| GPL14372_Probes_72397 | ||||||
| GPL14372_Probes_72400 | ||||||
| GPL14372_Probes_72401 | ||||||
| GPL14372_Probes_72402 | ||||||
| Matching_cDNA | FG104356 | Inferred_automatically | transcript_builder.pl | |||
| CN656811 | Inferred_automatically | transcript_builder.pl | ||||
| FG102040 | Inferred_automatically | transcript_builder.pl | ||||
| AW114108 | Inferred_automatically | transcript_builder.pl | ||||
| CN656998 | Inferred_automatically | transcript_builder.pl | ||||
| FG104978 | Inferred_automatically | transcript_builder.pl | ||||
| FG106303 | Inferred_automatically | transcript_builder.pl | ||||
| FG103904 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_72396 | |||||
| GPL14372_Probes_72397 | ||||||
| GPL14372_Probes_72400 | ||||||
| GPL14372_Probes_72401 | ||||||
| GPL14372_Probes_72402 | ||||||
| RNASeq_FPKM | WBls:0000032 | 116.771 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 31.1441 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-21.58 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
