WormBase Tree Display for CDS: PPA27337
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| PPA27337 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (15) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-22.9 | ||
| TREEFAM | TREEFAM_ID | TF313268 | ||||
| DB_remark | PPA-EARS-2 protein; contains similarity to Pfam domain PF00749 (tRNA synthetases class I (E and Q), catalytic domain); contains similarity to Interpro domains IPR008925 (Aminoacyl-tRNA synthetase, class I, anticodon-binding superfamily), IPR004527 (Glutamate-tRNA ligase, bacterial/mitochondrial), IPR000924 (Glutamyl/glutaminyl-tRNA synthetase), IPR020751 (Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2), IPR020058 (Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00116891 | ||||
| Corresponding_transcript | PPA27337.1 | |||||
| Corresponding_protein | PP55019 | |||||
| Corresponding_oligo_set | GPL14372_Probes_72357 | |||||
| GPL14372_Probes_72358 | ||||||
| Matching_cDNA | AW052453 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_72357 | |||||
| GPL14372_Probes_72358 | ||||||
| RNASeq_FPKM | WBls:0000032 | 7.48535 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 5.89373 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-22.9 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
