WormBase Tree Display for CDS: PPA27343
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| PPA27343 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 69 | |||
| 143 | 268 | |||||
| 975 | 1153 | |||||
| 1195 | 1318 | |||||
| 1396 | 1496 | |||||
| 1848 | 1947 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-49.38 | ||
| DB_remark | PPA-IFE-3 protein; contains similarity to Pfam domain PF01652 (Eukaryotic initiation factor 4E); contains similarity to Interpro domains IPR001040 (Translation Initiation factor eIF- 4e), IPR023398 (Translation Initiation factor eIF- 4e-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00116897 | ||||
| Corresponding_transcript | PPA27343.1 | |||||
| Corresponding_protein | PP18419 | |||||
| Corresponding_oligo_set | GPL14372_Probes_36376 | |||||
| GPL14372_Probes_36377 | ||||||
| GPL14372_Probes_36378 | ||||||
| GPL14372_Probes_36379 | ||||||
| Matching_cDNA | AW115299 | Inferred_automatically | transcript_builder.pl | |||
| AW097169 | Inferred_automatically | transcript_builder.pl | ||||
| FG098677 | Inferred_automatically | transcript_builder.pl | ||||
| FG097439 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_36376 | |||||
| GPL14372_Probes_36377 | ||||||
| GPL14372_Probes_36378 | ||||||
| GPL14372_Probes_36379 | ||||||
| RNASeq_FPKM | WBls:0000032 | 53.2066 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 57.6105 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S7-49.38 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
