WormBase Tree Display for CDS: PPA27558
expand all nodes | collapse all nodes | view schema
PPA27558 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 56 | |||
119 | 261 | |||||
333 | 401 | |||||
461 | 533 | |||||
593 | 695 | |||||
775 | 895 | |||||
984 | 1081 | |||||
1158 | 1199 | |||||
1335 | 1431 | |||||
1535 | 1617 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-46.97 | ||
DB_remark | contains similarity to Pfam domain PF00089 (Trypsin); contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin family), IPR043504 (Peptidase S1, PA clan, chymotrypsin-like fold), IPR001254 (Serine proteases, trypsin domain), IPR009003 (Peptidase S1, PA clan) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00117112 | ||||
Corresponding_transcript | PPA27558.1 | |||||
Corresponding_protein | PP14263 | |||||
Corresponding_oligo_set | GPL14372_Probes_7326 | |||||
GPL14372_Probes_7327 | ||||||
GPL14372_Probes_7328 | ||||||
GPL14372_Probes_7329 | ||||||
GPL14372_Probes_7330 | ||||||
Microarray_results | GPL14372_Probes_7326 | |||||
GPL14372_Probes_7327 | ||||||
GPL14372_Probes_7328 | ||||||
GPL14372_Probes_7329 | ||||||
GPL14372_Probes_7330 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S10-46.97 | Curator_confirmed | WBPerson4055 | |||
Method | curated |