WormBase Tree Display for CDS: PPA28013
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PPA28013 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 123 | |||
288 | 383 | |||||
454 | 587 | |||||
726 | 804 | |||||
2414 | 2476 | |||||
2560 | 2682 | |||||
2916 | 3039 | |||||
3086 | 3156 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-67.36 | ||
TREEFAM | TREEFAM_ID | TF314073 | ||||
DB_remark | contains similarity to Pfam domain PF04893 (Yip1 domain); contains similarity to Interpro domains IPR006977 (Yip1 domain), IPR026637 () | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00117567 | ||||
Corresponding_transcript | PPA28013.1 | |||||
Corresponding_protein | PP58078 | |||||
Corresponding_oligo_set | GPL14372_Probes_58502 | |||||
GPL14372_Probes_58503 | ||||||
GPL14372_Probes_58504 | ||||||
GPL14372_Probes_58505 | ||||||
GPL14372_Probes_58506 | ||||||
Microarray_results | GPL14372_Probes_58502 | |||||
GPL14372_Probes_58503 | ||||||
GPL14372_Probes_58504 | ||||||
GPL14372_Probes_58505 | ||||||
GPL14372_Probes_58506 | ||||||
RNASeq_FPKM | WBls:0000032 | 26.455 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 12.5002 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-67.36 | Curator_confirmed | WBPerson4055 | |||
Method | curated |