WormBase Tree Display for CDS: PPA28026
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PPA28026 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (12) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-69.27 | ||
TREEFAM | TREEFAM_ID | TF316783 | ||||
DB_remark | contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00117580 | ||||
Corresponding_transcript | PPA28026.1 | |||||
Corresponding_protein | PP31638 | |||||
Corresponding_oligo_set | GPL14372_Probes_58586 | |||||
Microarray_results | GPL14372_Probes_58586 | |||||
RNASeq_FPKM | WBls:0000032 | 3.12528 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-69.27 | Curator_confirmed | WBPerson4055 | |||
Method | curated |