WormBase Tree Display for CDS: PPA28173
expand all nodes | collapse all nodes | view schema
| PPA28173 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (41) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-74.32 | ||
| DB_remark | PPA-UNC-104.1 protein; contains similarity to Pfam domains PF00169 (PH domain), PF00225 (Kinesin motor domain), PF00498 (FHA domain), PF12423 (Kinesin protein 1B), PF12473 (Kinesin protein), PF16183 (Kinesin-associated); contains similarity to Interpro domains IPR008984 (SMAD/FHA domain superfamily), IPR022140 (Kinesin-like KIF1-type), IPR022164 (Kinesin-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR032405 (Kinesin-associated), IPR001752 (Kinesin motor domain), IPR001849 (Pleckstrin homology domain), IPR011993 (PH-like domain superfamily), IPR036961 (Kinesin motor domain superfamily), IPR000253 (Forkhead-associated (FHA) domain), IPR027640 (Kinesin-like protein) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00117727 | ||||
| Corresponding_transcript | PPA28173.1 | |||||
| Corresponding_protein | PP74992 | |||||
| Corresponding_oligo_set | GPL14372_Probes_12501 | |||||
| GPL14372_Probes_12502 | ||||||
| GPL14372_Probes_12503 | ||||||
| GPL14372_Probes_12504 | ||||||
| GPL14372_Probes_12505 | ||||||
| Microarray_results | GPL14372_Probes_12501 | |||||
| GPL14372_Probes_12502 | ||||||
| GPL14372_Probes_12503 | ||||||
| GPL14372_Probes_12504 | ||||||
| GPL14372_Probes_12505 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 24 Jul 2019 13:00:50 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S10-74.32 | Curator_confirmed | WBPerson4055 | |||
| [190724 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
