WormBase Tree Display for CDS: PPA28187
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PPA28187 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 48 | |||
102 | 164 | |||||
217 | 277 | |||||
2363 | 2457 | |||||
2506 | 2556 | |||||
2856 | 2952 | |||||
3001 | 3038 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-75.4 | ||
DB_remark | PPA-CAL-8 protein; contains similarity to Pfam domain PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR002048 (EF-hand domain), IPR011992 (EF-hand domain pair) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00117741 | ||||
Corresponding_transcript | PPA28187.1 | |||||
Corresponding_protein | PP66078 | |||||
Corresponding_oligo_set | GPL14372_Probes_12521 | |||||
GPL14372_Probes_12522 | ||||||
Microarray_results | GPL14372_Probes_12521 | |||||
GPL14372_Probes_12522 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-75.4 | Curator_confirmed | WBPerson4055 | |||
Method | curated |