WormBase Tree Display for CDS: PPA28195
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PPA28195 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (24) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-75.5 | ||
DB_remark | contains similarity to Pfam domains PF01585 (G-patch domain), PF07842 (GC-rich sequence DNA-binding factor-like protein), PF12457 (Tuftelin interacting protein N terminal); contains similarity to Interpro domains IPR022159 (Tuftelin interacting protein, N-terminal domain), IPR022783 (GCF, C-terminal), IPR024933 (Septin and tuftelin interacting protein), IPR000467 (G-patch domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00117749 | ||||
Corresponding_transcript | PPA28195.1 | |||||
Corresponding_protein | PP32344 | |||||
Corresponding_oligo_set | GPL14372_Probes_12527 | |||||
GPL14372_Probes_58896 | ||||||
GPL14372_Probes_58897 | ||||||
Matching_cDNA | AI988747 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_12527 | |||||
GPL14372_Probes_58896 | ||||||
GPL14372_Probes_58897 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.44334 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-75.5 | Curator_confirmed | WBPerson4055 | |||
Method | curated |