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WormBase Tree Display for CDS: PPA28195

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Name Class

PPA28195SMapS_parentSequencePPA_ChrII
StructureSource_exons (24)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-75.5
DB_remarkcontains similarity to Pfam domains PF01585 (G-patch domain), PF07842 (GC-rich sequence DNA-binding factor-like protein), PF12457 (Tuftelin interacting protein N terminal); contains similarity to Interpro domains IPR022159 (Tuftelin interacting protein, N-terminal domain), IPR022783 (GCF, C-terminal), IPR024933 (Septin and tuftelin interacting protein), IPR000467 (G-patch domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00117749
Corresponding_transcriptPPA28195.1
Corresponding_proteinPP32344
Corresponding_oligo_setGPL14372_Probes_12527
GPL14372_Probes_58896
GPL14372_Probes_58897
Matching_cDNAAI988747Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_12527
GPL14372_Probes_58896
GPL14372_Probes_58897
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.44334From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-75.5Curator_confirmedWBPerson4055
Methodcurated