WormBase Tree Display for CDS: PPA28241
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PPA28241 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (71) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-77.25 | ||
TREEFAM | TREEFAM_ID | TF314466 | ||||
DB_remark | PPA-SPDS-1 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain), PF01564 (Spermine/spermidine synthase domain), PF08652 (RAI1 like PD-(D/E)XK nuclease), PF17284 (Spermidine synthase tetramerisation domain); contains similarity to Interpro domains IPR035246 (Spermidine synthase, tetramerisation domain), IPR037163 (Spermidine synthase, tetramerisation domain superfamily), IPR013961 (RAI1-like), IPR000210 (BTB/POZ domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR039039 (RAI1-like family), IPR001045 (Spermidine/spermine synthases) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00117795 | ||||
Corresponding_transcript | PPA28241.1 | |||||
Corresponding_protein | PP53181 | |||||
Corresponding_oligo_set (19) | ||||||
Matching_cDNA | BI500772 | Inferred_automatically | transcript_builder.pl | |||
BI500409 | Inferred_automatically | transcript_builder.pl | ||||
BI500373 | Inferred_automatically | transcript_builder.pl | ||||
FG106516 | Inferred_automatically | transcript_builder.pl | ||||
FG101807 | Inferred_automatically | transcript_builder.pl | ||||
FG101203 | Inferred_automatically | transcript_builder.pl | ||||
BI500188 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (19) | ||||||
RNASeq_FPKM | WBls:0000032 | 4.58533 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.98986 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-77.25 | Curator_confirmed | WBPerson4055 | |||
Method | curated |