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WormBase Tree Display for CDS: PPA28241

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Name Class

PPA28241SMapS_parentSequencePPA_ChrII
StructureSource_exons (71)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-77.25
TREEFAMTREEFAM_IDTF314466
DB_remarkPPA-SPDS-1 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain), PF01564 (Spermine/spermidine synthase domain), PF08652 (RAI1 like PD-(D/E)XK nuclease), PF17284 (Spermidine synthase tetramerisation domain); contains similarity to Interpro domains IPR035246 (Spermidine synthase, tetramerisation domain), IPR037163 (Spermidine synthase, tetramerisation domain superfamily), IPR013961 (RAI1-like), IPR000210 (BTB/POZ domain), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR039039 (RAI1-like family), IPR001045 (Spermidine/spermine synthases)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00117795
Corresponding_transcriptPPA28241.1
Corresponding_proteinPP53181
Corresponding_oligo_set (19)
Matching_cDNABI500772Inferred_automaticallytranscript_builder.pl
BI500409Inferred_automaticallytranscript_builder.pl
BI500373Inferred_automaticallytranscript_builder.pl
FG106516Inferred_automaticallytranscript_builder.pl
FG101807Inferred_automaticallytranscript_builder.pl
FG101203Inferred_automaticallytranscript_builder.pl
BI500188Inferred_automaticallytranscript_builder.pl
Microarray_results (19)
RNASeq_FPKMWBls:00000324.58533From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.98986From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-77.25Curator_confirmedWBPerson4055
Methodcurated