WormBase Tree Display for CDS: PPA28256
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PPA28256 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (29) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-79.54 | ||
DB_remark | contains similarity to Pfam domain PF12348 (CLASP N terminal); contains similarity to Interpro domains IPR034085 (TOG domain), IPR024395 (CLASP N-terminal domain), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00117810 | ||||
Corresponding_transcript | PPA28256.1 | |||||
Corresponding_protein | PP19264 | |||||
Corresponding_oligo_set | GPL14372_Probes_59076 | |||||
GPL14372_Probes_59077 | ||||||
GPL14372_Probes_59079 | ||||||
Matching_cDNA | AW114642 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_59076 | |||||
GPL14372_Probes_59077 | ||||||
GPL14372_Probes_59079 | ||||||
RNASeq_FPKM | WBls:0000032 | 30.3763 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 22.0756 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-79.54 | Curator_confirmed | WBPerson4055 | |||
Method | curated |