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WormBase Tree Display for CDS: PPA28309

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Name Class

PPA28309SMapS_parentSequencePPA_ChrII
StructureSource_exons (20)
DB_infoDatabasepristionchus.orgcdsgene-UMA-S10-81.31
TREEFAMTREEFAM_IDTF300854
DB_remarkPPA-CYN-4 protein; contains similarity to Pfam domain PF00160 (Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD); contains similarity to Interpro domains IPR029000 (Cyclophilin-like domain superfamily), IPR003613 (U-box domain), IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00117863
Corresponding_transcriptPPA28309.1
Corresponding_proteinPP68100
Corresponding_oligo_setGPL14372_Probes_59227
GPL14372_Probes_59228
GPL14372_Probes_59229
GPL14372_Probes_59230
GPL14372_Probes_59231
Matching_cDNAFG099819Inferred_automaticallytranscript_builder.pl
AW097840Inferred_automaticallytranscript_builder.pl
FG101380Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_59227
GPL14372_Probes_59228
GPL14372_Probes_59229
GPL14372_Probes_59230
GPL14372_Probes_59231
RNASeq_FPKMWBls:000003256.2506From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010174.4059From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMA-S10-81.31Curator_confirmedWBPerson4055
Methodcurated