WormBase Tree Display for CDS: PPA28309
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PPA28309 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-81.31 | ||
TREEFAM | TREEFAM_ID | TF300854 | ||||
DB_remark | PPA-CYN-4 protein; contains similarity to Pfam domain PF00160 (Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD); contains similarity to Interpro domains IPR029000 (Cyclophilin-like domain superfamily), IPR003613 (U-box domain), IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00117863 | ||||
Corresponding_transcript | PPA28309.1 | |||||
Corresponding_protein | PP68100 | |||||
Corresponding_oligo_set | GPL14372_Probes_59227 | |||||
GPL14372_Probes_59228 | ||||||
GPL14372_Probes_59229 | ||||||
GPL14372_Probes_59230 | ||||||
GPL14372_Probes_59231 | ||||||
Matching_cDNA | FG099819 | Inferred_automatically | transcript_builder.pl | |||
AW097840 | Inferred_automatically | transcript_builder.pl | ||||
FG101380 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_59227 | |||||
GPL14372_Probes_59228 | ||||||
GPL14372_Probes_59229 | ||||||
GPL14372_Probes_59230 | ||||||
GPL14372_Probes_59231 | ||||||
RNASeq_FPKM | WBls:0000032 | 56.2506 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 74.4059 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S10-81.31 | Curator_confirmed | WBPerson4055 | |||
Method | curated |