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WormBase Tree Display for CDS: PPA28347

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Name Class

PPA28347SMapS_parentSequencePPA_ChrII
StructureSource_exons (12)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-83.54
TREEFAMTREEFAM_IDTF106000
DB_remarkPPA-ALGN-2 protein; contains similarity to Pfam domains PF00534 (Glycosyl transferases group 1), PF13439 (Glycosyltransferase Family 4); contains similarity to Interpro domains IPR028098 (Glycosyltransferase subfamily 4-like, N-terminal domain), IPR027054 (Mannosyltransferase ALG2), IPR001296 (Glycosyl transferase, family 1)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00117901
Corresponding_transcriptPPA28347.1
Corresponding_proteinPP23696
Corresponding_oligo_setGPL14372_Probes_59335
GPL14372_Probes_59336
GPL14372_Probes_59337
GPL14372_Probes_59338
GPL14372_Probes_59339
GPL14372_Probes_59340
Matching_cDNABQ088013Inferred_automaticallytranscript_builder.pl
AI986697Inferred_automaticallytranscript_builder.pl
BI500567Inferred_automaticallytranscript_builder.pl
BI703617Inferred_automaticallytranscript_builder.pl
BI500202Inferred_automaticallytranscript_builder.pl
BQ088243Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_59335
GPL14372_Probes_59336
GPL14372_Probes_59337
GPL14372_Probes_59338
GPL14372_Probes_59339
GPL14372_Probes_59340
RNASeq_FPKMWBls:000003225.3994From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010126.6655From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-83.54Curator_confirmedWBPerson4055
Methodcurated