WormBase Tree Display for CDS: PPA28347
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PPA28347 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (12) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-83.54 | ||
TREEFAM | TREEFAM_ID | TF106000 | ||||
DB_remark | PPA-ALGN-2 protein; contains similarity to Pfam domains PF00534 (Glycosyl transferases group 1), PF13439 (Glycosyltransferase Family 4); contains similarity to Interpro domains IPR028098 (Glycosyltransferase subfamily 4-like, N-terminal domain), IPR027054 (Mannosyltransferase ALG2), IPR001296 (Glycosyl transferase, family 1) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00117901 | ||||
Corresponding_transcript | PPA28347.1 | |||||
Corresponding_protein | PP23696 | |||||
Corresponding_oligo_set | GPL14372_Probes_59335 | |||||
GPL14372_Probes_59336 | ||||||
GPL14372_Probes_59337 | ||||||
GPL14372_Probes_59338 | ||||||
GPL14372_Probes_59339 | ||||||
GPL14372_Probes_59340 | ||||||
Matching_cDNA | BQ088013 | Inferred_automatically | transcript_builder.pl | |||
AI986697 | Inferred_automatically | transcript_builder.pl | ||||
BI500567 | Inferred_automatically | transcript_builder.pl | ||||
BI703617 | Inferred_automatically | transcript_builder.pl | ||||
BI500202 | Inferred_automatically | transcript_builder.pl | ||||
BQ088243 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_59335 | |||||
GPL14372_Probes_59336 | ||||||
GPL14372_Probes_59337 | ||||||
GPL14372_Probes_59338 | ||||||
GPL14372_Probes_59339 | ||||||
GPL14372_Probes_59340 | ||||||
RNASeq_FPKM | WBls:0000032 | 25.3994 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 26.6655 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-83.54 | Curator_confirmed | WBPerson4055 | |||
Method | curated |