WormBase Tree Display for CDS: PPA28348
expand all nodes | collapse all nodes | view schema
PPA28348 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 58 | |||
901 | 1025 | |||||
1217 | 1291 | |||||
1455 | 1528 | |||||
1580 | 1685 | |||||
2971 | 3108 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-83.47 | ||
DB_remark | contains similarity to Pfam domain PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain); contains similarity to Interpro domains IPR036291 (NAD(P)-binding domain superfamily), IPR006176 (3-hydroxyacyl-CoA dehydrogenase, NAD binding) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00117902 | ||||
Corresponding_transcript | PPA28348.1 | |||||
Corresponding_protein | PP63575 | |||||
Corresponding_oligo_set | GPL14372_Probes_59343 | |||||
GPL14372_Probes_59345 | ||||||
GPL14372_Probes_59346 | ||||||
GPL14372_Probes_59347 | ||||||
Microarray_results | GPL14372_Probes_59343 | |||||
GPL14372_Probes_59345 | ||||||
GPL14372_Probes_59346 | ||||||
GPL14372_Probes_59347 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 91.9722 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-83.47 | Curator_confirmed | WBPerson4055 | |||
Method | curated |