WormBase Tree Display for CDS: PPA28599
expand all nodes | collapse all nodes | view schema
| PPA28599 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (32) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-2.51 | ||
| DB_remark | PPA-RPOM-1 protein; contains similarity to Pfam domain PF00940 (DNA-dependent RNA polymerase); contains similarity to Interpro domains IPR029262 (DNA-directed RNA polymerase, N-terminal), IPR043502 (DNA/RNA polymerase superfamily), IPR002092 (DNA-directed RNA polymerase, phage-type) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00118153 | ||||
| Corresponding_transcript | PPA28599.1 | |||||
| Corresponding_protein | PP75319 | |||||
| Corresponding_oligo_set | GPL14372_Probes_78522 | |||||
| GPL14372_Probes_78523 | ||||||
| GPL14372_Probes_78524 | ||||||
| GPL14372_Probes_78526 | ||||||
| GPL14372_Probes_78527 | ||||||
| Microarray_results | GPL14372_Probes_78522 | |||||
| GPL14372_Probes_78523 | ||||||
| GPL14372_Probes_78524 | ||||||
| GPL14372_Probes_78526 | ||||||
| GPL14372_Probes_78527 | ||||||
| RNASeq_FPKM | WBls:0000032 | 7.12645 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 6.01136 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 17 Sep 2019 16:08:38 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S57-2.51 | Curator_confirmed | WBPerson4055 | |||
| [190917 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
