WormBase Tree Display for CDS: PPA28620
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PPA28620 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 17 | |||
94 | 259 | |||||
308 | 414 | |||||
460 | 631 | |||||
678 | 729 | |||||
774 | 852 | |||||
915 | 1056 | |||||
1100 | 1236 | |||||
1314 | 1384 | |||||
1460 | 1533 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-1.11 | ||
DB_remark | contains similarity to Pfam domain PF10328 (Serpentine type 7TM GPCR chemoreceptor Srx); contains similarity to Interpro domain IPR019430 (7TM GPCR, serpentine receptor class x (Srx)) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00118174 | ||||
Corresponding_transcript | PPA28620.1 | |||||
Corresponding_protein | PP72553 | |||||
Corresponding_oligo_set | GPL14372_Probes_78474 | |||||
Microarray_results | GPL14372_Probes_78474 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-1.11 | Curator_confirmed | WBPerson4055 | |||
Method | curated |