WormBase Tree Display for CDS: PPA28624
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| PPA28624 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (63) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-1.75 | ||
| TREEFAM | TREEFAM_ID | TF300763 | ||||
| DB_remark | PPA-SDHA-1 protein; contains similarity to Pfam domains PF00890 (FAD binding domain), PF01529 (DHHC palmitoyltransferase), PF02910 (Fumarate reductase flavoprotein C-term), PF04181 (Rtr1/RPAP2 family), PF07690 (Major Facilitator Superfamily), PF12796 (Ankyrin repeats (3 copies)); contains similarity to Interpro domains IPR001594 (Palmitoyltransferase, DHHC domain), IPR027477 (Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily), IPR011701 (Major facilitator superfamily), IPR002110 (Ankyrin repeat), IPR011281 (Succinate dehydrogenase, flavoprotein subunit), IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR036259 (MFS transporter superfamily), IPR020683 (Domain of unknown function DUF3447), IPR037099 (Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily), IPR015939 (Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal), IPR007308 (Rtr1/RPAP2 domain), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR038534 (Rtr1/RPAP2 domain superfamily), IPR003953 (FAD-dependent oxidoreductase 2, FAD binding domain), IPR014006 (Succinate dehydrogenase/fumarate reductase, flavoprotein subunit) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118178 | ||||
| Corresponding_transcript | PPA28624.1 | |||||
| Corresponding_protein | PP69391 | |||||
| Corresponding_oligo_set (21) | ||||||
| Microarray_results (21) | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.43513 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 11.8632 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-1.75 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
