WormBase Tree Display for CDS: PPA28627
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PPA28627 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (29) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-0.51 | ||
TREEFAM | TREEFAM_ID | TF321158 | ||||
DB_remark | PPA-CEST-26 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00135 (Carboxylesterase family); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR029058 (Alpha/Beta hydrolase fold), IPR002018 (Carboxylesterase, type B), IPR000719 (Protein kinase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118181 | ||||
Corresponding_transcript | PPA28627.1 | |||||
Corresponding_protein | PP62980 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA | FG097986 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (12) | ||||||
RNASeq_FPKM | WBls:0000032 | 6.0045 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 22.6913 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-0.51 | Curator_confirmed | WBPerson4055 | |||
Method | curated |