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WormBase Tree Display for CDS: PPA28629

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Name Class

PPA28629SMapS_parentSequencePPA_ChrI
StructureSource_exons (34)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-0.4
TREEFAMTREEFAM_IDTF313152
DB_remarkPPA-AMAN-3 protein; contains similarity to Pfam domains PF01074 (Glycosyl hydrolases family 38 N-terminal domain), PF07748 (Glycosyl hydrolases family 38 C-terminal domain), PF09261 (Alpha mannosidase middle domain); contains similarity to Interpro domains IPR037094 (Glycoside hydrolase family 38, central domain superfamily), IPR028995 (Glycoside hydrolase families 57/38, central domain superfamily), IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR027291 (Glycoside hydrolase 38, N-terminal domain superfamily), IPR015341 (Glycoside hydrolase family 38, central domain), IPR011682 (Glycosyl hydrolase family 38, C-terminal), IPR000602 (Glycoside hydrolase family 38, N-terminal domain), IPR011013 (Galactose mutarotase-like domain superfamily), IPR013780 (Glycosyl hydrolase, all-beta)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00118183
Corresponding_transcriptPPA28629.1
Corresponding_proteinPP57033
Corresponding_oligo_setGPL14372_Probes_78422
GPL14372_Probes_78423
GPL14372_Probes_78424
Microarray_resultsGPL14372_Probes_78422
GPL14372_Probes_78423
GPL14372_Probes_78424
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-0.4Curator_confirmedWBPerson4055
Methodcurated