WormBase Tree Display for CDS: PPA28629
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PPA28629 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (34) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-0.4 | ||
TREEFAM | TREEFAM_ID | TF313152 | ||||
DB_remark | PPA-AMAN-3 protein; contains similarity to Pfam domains PF01074 (Glycosyl hydrolases family 38 N-terminal domain), PF07748 (Glycosyl hydrolases family 38 C-terminal domain), PF09261 (Alpha mannosidase middle domain); contains similarity to Interpro domains IPR037094 (Glycoside hydrolase family 38, central domain superfamily), IPR028995 (Glycoside hydrolase families 57/38, central domain superfamily), IPR011330 (Glycoside hydrolase/deacetylase, beta/alpha-barrel), IPR027291 (Glycoside hydrolase 38, N-terminal domain superfamily), IPR015341 (Glycoside hydrolase family 38, central domain), IPR011682 (Glycosyl hydrolase family 38, C-terminal), IPR000602 (Glycoside hydrolase family 38, N-terminal domain), IPR011013 (Galactose mutarotase-like domain superfamily), IPR013780 (Glycosyl hydrolase, all-beta) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00118183 | ||||
Corresponding_transcript | PPA28629.1 | |||||
Corresponding_protein | PP57033 | |||||
Corresponding_oligo_set | GPL14372_Probes_78422 | |||||
GPL14372_Probes_78423 | ||||||
GPL14372_Probes_78424 | ||||||
Microarray_results | GPL14372_Probes_78422 | |||||
GPL14372_Probes_78423 | ||||||
GPL14372_Probes_78424 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-0.4 | Curator_confirmed | WBPerson4055 | |||
Method | curated |