WormBase Tree Display for CDS: PPA28631
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| PPA28631 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-0.3 | ||
| TREEFAM | TREEFAM_ID | TF313812 | ||||
| DB_remark | PPA-PLPP-1.3 protein; contains similarity to Pfam domain PF01569 (PAP2 superfamily); contains similarity to Interpro domains IPR036938 (Phosphatidic acid phosphatase type 2/haloperoxidase superfamily), IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR043216 (Phosphatidate (PA) phosphatase-related) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118185 | ||||
| Corresponding_transcript | PPA28631.1 | |||||
| Corresponding_protein | PP66673 | |||||
| Corresponding_oligo_set | GPL14372_Probes_78411 | |||||
| GPL14372_Probes_78413 | ||||||
| GPL14372_Probes_78414 | ||||||
| GPL14372_Probes_78415 | ||||||
| GPL14372_Probes_78416 | ||||||
| GPL14372_Probes_78417 | ||||||
| GPL14372_Probes_78418 | ||||||
| Microarray_results | GPL14372_Probes_78411 | |||||
| GPL14372_Probes_78413 | ||||||
| GPL14372_Probes_78414 | ||||||
| GPL14372_Probes_78415 | ||||||
| GPL14372_Probes_78416 | ||||||
| GPL14372_Probes_78417 | ||||||
| GPL14372_Probes_78418 | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.73182 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 22.5644 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-0.3 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
