WormBase Tree Display for CDS: PPA28633
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| PPA28633 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (44) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-0.8 | ||
| TREEFAM | TREEFAM_ID | TF103036 | ||||
| DB_remark | PPA-AMA-1 protein; contains similarity to Pfam domains PF00623 (RNA polymerase Rpb1, domain 2), PF04983 (RNA polymerase Rpb1, domain 3), PF04990 (RNA polymerase Rpb1, domain 7), PF04992 (RNA polymerase Rpb1, domain 6), PF04997 (RNA polymerase Rpb1, domain 1), PF04998 (RNA polymerase Rpb1, domain 5), PF05000 (RNA polymerase Rpb1, domain 4); contains similarity to Interpro domains IPR006592 (RNA polymerase, N-terminal), IPR007080 (RNA polymerase Rpb1, domain 1), IPR007083 (RNA polymerase Rpb1, domain 4), IPR000722 (RNA polymerase, alpha subunit), IPR042102 (RNA polymerase Rpb1, domain 3 superfamily), IPR038593 (RNA polymerase Rpb1, domain 7 superfamily), IPR007066 (RNA polymerase Rpb1, domain 3), IPR038120 (RNA polymerase Rpb1, funnel domain superfamily), IPR007073 (RNA polymerase Rpb1, domain 7), IPR007081 (RNA polymerase Rpb1, domain 5), IPR007075 (RNA polymerase Rpb1, domain 6) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118187 | ||||
| Corresponding_transcript | PPA28633.1 | |||||
| Corresponding_protein | PP73986 | |||||
| Corresponding_oligo_set | GPL14372_Probes_78405 | |||||
| GPL14372_Probes_78406 | ||||||
| GPL14372_Probes_78408 | ||||||
| GPL14372_Probes_78409 | ||||||
| Matching_cDNA | EU153426 | Inferred_automatically | transcript_builder.pl | |||
| FE934391 | Inferred_automatically | transcript_builder.pl | ||||
| AA192066 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_78405 | |||||
| GPL14372_Probes_78406 | ||||||
| GPL14372_Probes_78408 | ||||||
| GPL14372_Probes_78409 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.85726 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 17.9249 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-0.8 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
