WormBase Tree Display for CDS: PPA28643
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| PPA28643 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (49) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-0.39 | ||
| TREEFAM | TREEFAM_ID | TF300648 | ||||
| DB_remark | PPA-GLP-4 protein; contains similarity to Pfam domains PF00133 (tRNA synthetases class I (I, L, M and V)), PF01728 (FtsJ-like methyltransferase), PF08264 (Anticodon-binding domain of tRNA ligase); contains similarity to Interpro domains IPR013155 (Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding), IPR002300 (Aminoacyl-tRNA synthetase, class Ia), IPR009080 (Aminoacyl-tRNA synthetase, class Ia, anticodon-binding), IPR009008 (Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain), IPR002877 (Ribosomal RNA methyltransferase, FtsJ domain), IPR002303 (Valine-tRNA ligase), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00118197 | ||||
| Corresponding_transcript | PPA28643.1 | |||||
| Corresponding_protein | PP54605 | |||||
| Corresponding_oligo_set (12) | ||||||
| Microarray_results (12) | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.2758 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 8.56659 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-0.39 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
