WormBase Tree Display for CDS: PPA28652
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PPA28652 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (29) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-0.53 | ||
TREEFAM | TREEFAM_ID | TF300866 | ||||
DB_remark | PPA-SYF-1 protein; contains similarity to Interpro domains IPR003107 (HAT (Half-A-TPR) repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118206 | ||||
Corresponding_transcript | PPA28652.1 | |||||
Corresponding_protein | PP64829 | |||||
Corresponding_oligo_set (14) | ||||||
Matching_cDNA | FE934374 | Inferred_automatically | transcript_builder.pl | |||
AA191971 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results (14) | ||||||
RNASeq_FPKM | WBls:0000032 | 32.1969 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 49.289 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-0.53 | Curator_confirmed | WBPerson4055 | |||
Method | curated |