WormBase Tree Display for CDS: PPA28684
expand all nodes | collapse all nodes | view schema
| PPA28684 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S207-1.38 | ||
| TREEFAM | TREEFAM_ID | TF314576 | ||||
| DB_remark | contains similarity to Pfam domains PF00112 (Papain family cysteine protease), PF00149 (Calcineurin-like phosphoesterase); contains similarity to Interpro domains IPR029052 (Metallo-dependent phosphatase-like), IPR038765 (Papain-like cysteine peptidase superfamily), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase), IPR004843 (Calcineurin-like phosphoesterase domain, ApaH type), IPR000668 (Peptidase C1A, papain C-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00118238 | ||||
| Corresponding_transcript | PPA28684.1 | |||||
| Corresponding_protein | PP66185 | |||||
| Corresponding_oligo_set | GPL14372_Probes_78248 | |||||
| GPL14372_Probes_78250 | ||||||
| GPL14372_Probes_78251 | ||||||
| GPL14372_Probes_78252 | ||||||
| Microarray_results | GPL14372_Probes_78248 | |||||
| GPL14372_Probes_78250 | ||||||
| GPL14372_Probes_78251 | ||||||
| GPL14372_Probes_78252 | ||||||
| RNASeq_FPKM | WBls:0000032 | 8.45638 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 6.24156 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S207-1.38 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
