WormBase Tree Display for CDS: PPA28704
expand all nodes | collapse all nodes | view schema
PPA28704 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (26) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S207-3.44 | ||
DB_remark | contains similarity to Pfam domains PF01212 (Beta-eliminating lyase), PF01421 (Reprolysin (M12B) family zinc metalloprotease); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR036436 (Disintegrin domain superfamily), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR001597 (Aromatic amino acid beta-eliminating lyase/threonine aldolase), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain), IPR001590 (Peptidase M12B, ADAM/reprolysin), IPR023603 (Low specificity L-threonine aldolase-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00118258 | ||||
Corresponding_transcript | PPA28704.1 | |||||
Corresponding_protein | PP69865 | |||||
Corresponding_oligo_set | GPL14372_Probes_24882 | |||||
GPL14372_Probes_24883 | ||||||
GPL14372_Probes_24884 | ||||||
GPL14372_Probes_24885 | ||||||
GPL14372_Probes_24886 | ||||||
GPL14372_Probes_78173 | ||||||
GPL14372_Probes_78174 | ||||||
GPL14372_Probes_78175 | ||||||
GPL14372_Probes_78176 | ||||||
GPL14372_Probes_78177 | ||||||
Matching_cDNA | AA193790 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_24882 | |||||
GPL14372_Probes_24883 | ||||||
GPL14372_Probes_24884 | ||||||
GPL14372_Probes_24885 | ||||||
GPL14372_Probes_24886 | ||||||
GPL14372_Probes_78173 | ||||||
GPL14372_Probes_78174 | ||||||
GPL14372_Probes_78175 | ||||||
GPL14372_Probes_78176 | ||||||
GPL14372_Probes_78177 | ||||||
RNASeq_FPKM | WBls:0000032 | 34.2071 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 11.3113 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S207-3.44 | Curator_confirmed | WBPerson4055 | |||
Method | curated |